PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G168400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 414aa    MW: 43564.9 Da    PI: 4.5095
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G168400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.8e-1965114255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Sevir.9G168400.1.p  65 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 114
                         789******.7*********33....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.59E-3064121No hitNo description
PfamPF008471.0E-1365114IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1965122IPR016177DNA-binding domain
PROSITE profilePS5103219.55965122IPR001471AP2/ERF domain
SMARTSM003801.4E-3365128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2765121IPR001471AP2/ERF domain
PRINTSPR003676.1E-86677IPR001471AP2/ERF domain
PRINTSPR003676.1E-888104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MALKRKASSG LADDLMISCG GGDHSHAPPP LATGNSSFVP AAASSRASWA EAVGAAAAAQ  60
RGRKRFVGVR QRPSGRWVAE IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGANTRTN  120
FWPRAAGAAA AAATSLQHPP PPPSALPSKV TNLLLLRLKK ARSSAGAVAQ QAAPPVQHRQ  180
AQQVYGGQEE YSFHVDDFLS YDDNSTGDEL QAVKHEEGSN CSQETEDDGE EEEEEAPLDF  240
GFMDKQPSPA READDAAGLY SPFEVVADEL GGAADVEPSS AYGGESTASE PSGAIDEVMK  300
RMKYERKLSA SLYALSGVSE CLRMRLGDGG DIGTGRHELA LSGLRDACRK QQQEVVDEGG  360
VNVVGHDESS SCSNSVSSEA TSSSPEAASP PQDAKAVDSD MLLWSSLDLP PIC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-83CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankKJ7277041e-83KJ727704.1 Zea mays clone pUT5643 AP2-EREBP transcription factor (EREB142) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986381.10.0PREDICTED: ethylene-responsive transcription factor ESR1-like
TrEMBLK4AIY50.0K4AIY5_SETIT; Uncharacterized protein
STRINGSi038848m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-22related to AP2 11